Haydon said ill health causing death, ingestion of something or lack of food supply could have been the reason behind the marlin coming ashore.
Fishing of marlin species is usually more successful in summer months with more abundant numbers.
"Striped marlin, that can grow up to and in excess of 200kg, usually arrive in warmer waters during December or January and can range as far south as Gisborne and New Plymouth," Haydon said.
"Blue marlin, with an average size of 200kg, can make seasonal migrations into the temperate New Zealand waters for feeding in spring and summer too – so why it has washed up in winter is more of a mystery."
The public are encouraged to contact the Department of Conservation on 0800 362 468 for any sick, injured or dead wildlife spotted across the region.