It will be a high-efficiency store too, with five-high pallet racking, high air movement and automation.
Seeka chief executive Michael Franks said the project was expected to meet increasing and committed fruit volumes.
It would also provide the company with sufficient capacity over the next two years.
The investment would give Seeka more time to consider its capacity options moving forward, including the potential for a new packhouse on the Pukenga Orchard site.