However, the barrier was still in place this morning and a decision on when to remove it would be made after the river reached high tide.
MetService meteorologist April Clark said a council weather station in the Whanganui hill country recorded 14mm of rain between 7pm and 8pm on Monday.
A weather station at Kauangaroa on the Whangaehu River recorded 9.5mm of rain between 7pm and 8pm, and 15mm over 24 hours.
Whanganui Airport recorded 6mm of rain over 24 hours, as well as wind gusts of up to 96km/h.
Across the region, although a lot of water was in river systems, Shirley said river levels should have peaked this morning, with thunderstorms subsiding.
Clark said there was only a low risk of thunderstorms across Whanganui today, with showers expected to become more frequent and heavier in the evening.
"There are still some showers around, but nowhere near as active as we've seen in the past few days, so we're slowly on the easing trend," she said.
She said strong winds were expected today, with potentially gale-force gusts in exposed areas.
Clark expected the rough weather to ease going into tomorrow and the rest of the week, with only isolated showers remaining.