"There doesn't seem to be any requirements before this kind of work begins, assessments should be done to determine what sort of fish are living or using these waterways.
"Fish can use waterways for all sorts of things, some like to lay low or hide during the day and come out at night. There just needs to be some sort of ecological assessment before this kind of work is set to begin.
"If there's a native species in the water then they could be re-located so no harm comes to them."
The council currently uses two methods for clearing drains with a slotted bucket.
The preferred method in rural areas was to place the material on the bank of the drain, which gives maximum opportunity for any eels to be seen and return to the water body, Dolley said.
The second method was to place the material directly in a truck, which was used if the drain was alongside a road or orchards where placing material to the side of the drain wasn't possible.
A council spokesperson said it had already had discussions on Tuesday about how to do things better.
One option involved looking into a catch and release option with local iwi while other conversations were ongoing.