Both Theo and Laken have lost weight continually since being taken off the supplement, Ms Archer said in a Facebook post on the page she has used to chronicle the twins' journey.
"So two weeks ago the boys had their high calorie supplement stopped abruptly (not my choice, apparently the boys don't meet the 'funding criteria' anymore), and I was to replace the 3x100ml feeds per day with supermarket formula.
She had been breastfeeding and offered bottles and solids to the boys, but it wasn't helping, she said.
"Recovery isn't easy to watch... So hard seeing my boy uncomfortable at times. He looks at me with 'what's happening mama' eyes" Photo / supplied
Theo was 5.42kg and Laken was 5.37kg.
A dietician would assess the twins next week, Ms Archer said.
In June, Laken underwent five-and-a-half-hour surgery at Starship Hospital where surgeons patched up a large hole in his heart that was more than 2cm long.