Pearse said they were observation windows that look onto the prison landing.
There had also been some damage done to the interior of the cells.
After that had been attended to by staff, prisoners then broke the outward facing windows of their cells, which stand behind metal bars.
Pearse assured the inmates remained secure with no risk to any other prisoners or staff and would be dealt with accordingly.
"Six high-security prisoners were involved and have been placed on directed segregation and relocated out of the unit," he said in a statement.
"Two have since been transferred from Whanganui Prison.
"The other four prisoners have been separated.
"A full review of the incident is underway and those involved will be held to account for their actions and the damage they have caused."
Pearse denied it had been an organised riot, which Corrections defined as "a concerted, organised disorder event requiring external agency involvement".