Each additional toilet pan will be charged at $643 in capital rate and $314 in operating rate per year.
Those connected to the current wastewater system are paying an annual capital rate of $484 and an additional $523 in operating rate.
The new treatment plant will have the capacity to treat 1000cu m of wastewater per day, nearly twice the capacity of the current plant.
It will cater for about 870 properties currently connected to the scheme, an additional 350 in central Kerikeri that at present rely on septic tanks, and a further 350 to 400 new houses in future.
The new plant can easily be expanded to treat a further 500cu m of wastewater that should allow between 800 and 820 additional properties to be connected.
As of yesterday, 317 homes and businesses had signed up to connect to the new system.
In 2015, the council estimated the new scheme would cost $20.5 million but an increase in building costs since mean that figure has gone up.
"We aim to deliver the new plant and sewerage network so that costs to ratepayers are roughly what we estimated they would be when we first proposed the current project in 2015," Far North mayor John Carter said.
To gain final ministry approval, the council needed to show how the project would significantly improve sewage treatment in Kerikeri and cater for future growth. It said high-density housing zoned residential, commercial and industrial in town would be connected first before other areas.