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Reti said he was concerned that if Northlanders get the flu while waiting for their jab, serious consequences could follow.
"People with flu could end up being tested for coronavirus as well so there's quite a lot of consequences from not vaccinating on time."
He said some pharmacists he has spoken to said it took between six and nine months for flu vaccines to arrive, which meant the ministry would run out of time to get the vaccines by winter.
A ministry spokeswoman said the demand for flu vaccine had been extremely high and some practices had already run through their initial orders.
"We are working with the health and disability sector to ensure influenza vaccines are distributed equitably across New Zealand, to enable those at greatest risk to get vaccinated as soon as possible.
"Further deliveries of influenza vaccine are arriving in New Zealand shortly and there will be more stock available in the first half of April."
She said almost 900,000 vaccines had been sent to providers in New Zealand so far this year. The numbers for Northland aren't available at this stage.
"Influenza immunisation doesn't normally start until April, and the flu season doesn't normally start until late May," the spokeswoman said.