She said in the past numerous whales and dolphins had died in the harbour, but without testing for faecal matter she could not be sure that it was related to the pollution.
The treatment process includes 512 ultraviolet (UV) lamps that provides high intensity light that damages the bacteria or pathogen's ability to grow or replicate via a process not too dissimilar to that which causes sunburn, according to WDC waste and drainage manager Andrew Carvell.
It was switched on for the first time during the storm on August 2 and treated 23,600cu m of rain-diluted wastewater, killing 99.998 per cent of the bacteria that passed through it.
Up until now this water would have gone directly into the harbour.
"In the recent storm we estimate 726 trillion E. coli bacteria were killed that in the past would have gone into the harbour during a major rain storm," he said.
"The great thing about the new system is that we now have more treatment capacity than can actually be pumped to the plant, meaning everything will now be treated."
This $3 million project concludes Stage 1 of the council's wastewater improvement programme that aimed at dealing with the big sources of wastewater spills during storms.
Other projects completed in the past five years to reduce wet weather spills include the Okara pump station upgrade and the Hatea storage tank and treatment facility.
The Kamo Rd sewer will be upgraded and the wetlands along Kioreroa Rd are due to be renovated.