The study found babies with changes in the filaggrin gene were more likely to have a positive skin prick test to food allergens, but did not necessarily go on to develop a food allergy.
Prof Allen said the finding suggested babies were sensitive to food through the skin, but could counteract that by developing immune tolerance in the gut.
Using the earlier example of the egg allergy findings, Prof Allen said the filaggrin gene would increase the risk of a positive skin prick test, but if egg was consumed then that would decrease the risk of a full-blown allergy.
"But ... if you have the filaggrin gene and avoid the egg, then you are more likely to get food allergy," Prof Allen said.
The function of the filaggrin protein is to prevent water loss from the skin and protect the body from outside allergens.
Therefore, when this process breaks down it can lead to sensitisation including to foods through the skin.
Prof Allen said the research supported this theory, which could have implications for improving the skin care of babies by increasing hydration and reducing the use of soaps which can dry out the skin.
"Our research supports the biological model that we want to try and keep the skin in the best condition possible before the baby starts to eat," Prof Allen said.
"This is genetic evidence that a broken-down skin barrier increases the risk of having a positive skin prick test in that critical period before the baby has started to eat."
The research forms part of a wider study led by Prof Allen to track food allergy prevalence and causes.
- AAP