"If landlords have been renting out property for some time and have not saved their tax payments they may find themselves under some pressure and we would encourage them to speak to us as soon as possible," said Goggin.
Inland Revenue did not have rental numbers for Auckland but Statistics New Zealand Census data shows around 36 per cent of Auckland's 469,500 dwellings were not owned or not held in a family trust in 2013.
That has increased from 33.6 per cent in the 2006 Census.
In Christchurch more than 44,000 households rented their home out in 2013 and that is expected to hit a peak at the end of this year.
Andrew King, chief executive of the New Zealand Property Investors Federation, said there was a high demand for rentals in Auckland and constant turnover of landlords.
While accommodation in Christchurch was under pressure from people being displaced from their homes and workers helping to rebuild the city.
"Many people renting out accommodation may be first-time landlords and some may not be aware they have to pay tax."
Landlords can find out if they need to pay tax at this website.
How the tax is calculated varies depending if the property is a residential property, if you have taken in boarders or if it is a holiday home.
Those who file late income tax returns face penalties of up to $500 depending on their net income.