"The work so far has been confined to one section to allow the port to maintain its loading-unloading capability," Mr McGregor said.
"The works are a little behind programme as wet weather during May delayed progress and caused issues with satisfactory compaction."
He said it's expected that backfilling the upgraded section of the wharf and construction of the decking slab will continue until late July. The first stage of the concrete pour took place on June 28.
The work is the first visible sign of progress on the district council's plans for port development.
The old timber sheathing wall is being replaced with a sheet piled wall for the first 150m of the wharf and a heavy-duty loading area will be created. Piles under the remaining 75m of the wharf would be upgraded and some of the decking removed to make the area safe.
Mr McGregor said the contractor was working around the port's existing operations.
While closing the commercial port was one option council considered, it decided to make the commercial port more viable for future use, focus on more onshore-related business, and develop the recreational boating area.
A working group for recreational boat owners is working through a concept design for the staged development of the Wharf St boat ramp, including options for a user-pays system.
A refitted barge has been purchased for $200,000 to dredge navigable depths in the port. That was financed through the harbour endowment fund.
Other plans include upgrading the North Mole and repairing erosion-control structures on South Spit.