A heavy rain watch had been issued for the Wanganui headwaters, central North Island high country and Mt Taranaki.
Wellington was also in for a soaking but as the front moved across conditions were expected to improve later in the day.
Showers were forecast across Auckland this morning, clearing for a spell in the afternoon before returning later this evening.
The rain would sweep across the island through the day. The East Coast, Hawke's Bay and Wairarapa could expect strong gusty winds this afternoon but at this stage no warnings were in force, he said.
The South Island was not looking flash either with rain on the West Coast and a lot of cloud of the east.
Lee said the rain on the West Coast was expected to ease towards the evening and improve overnight.
A southerly change would start to sweep up the island from the deep south later today and temperatures will dropping.
Today's forecast
Auckland: Cloudy with a few morning/evening showers. 25
Hamilton: Occasional rain. 23
Wellington: Rain clearing in afternoon. 18
Christchurch:Light rain, showers, southerly change. 21
Dunedin: Rain, showers, south westerly change. 17