"To see evidence that these species are hanging on is fantastic. We hope to see other species turn up in future. The fact that they have persisted is also an indication that the restoration is going in the right direction," Mr Robbins said.
The group was planning to re-introduce Duvaucel's gecko to Okahu Island at the end of this year. Growing up to 30cm, Duvaucel's gecko is New Zealand's largest lizard and largest reptile after the tuatara.
Mr Robbins said Okahu had been chosen because it was furthest from the mainland, and there were no plans to relocate any forest birds, which could eat young geckos, there.
Because of its size there was little chance that Duvaucel's gecko had survived while pests were still on the islands.
A recent reptile survey on Okahu had found only shore skinks, but what appeared to be gecko footprints had been seen on Urupukapuka, the largest island in the group.
A reptile survey would be carried out on Moturua, where the Pacific gecko was seen, to see what else had clung on.
Moturua was the scene of a predator scare earlier this year when a Burmese cat jumped off a yacht and swam ashore. It took three weeks to catch the cat, using a cage trap baited with tinned tuna.
Project Island Song is a community-led initiative to restore native flora and fauna to the Ipipiri islands. It brings together conservation group Guardians of the Bay of Islands, the Department of Conservation, Rawhiti hapu and island land owners.
Species re-introduced so far include the tieke (saddleback), popokotea (whitehead) and toutouwai (North Island robin).