Short, thundery downpours could continue through the afternoon and evening before easing about 8pm, he said.
"Driving home there could be some heavy spray in places, there's also some risk of some small hail.
"If folks are heading in the car down to Waikato, there'll be some lovely rain for the paddocks there but also some good thunder.''
The weather would improve by the weekend, he said.
WeatherWatch head weather analyst Philip Duncan said some downpours may cause localised flash and surface flooding.
"If the sun comes out that could also lead to a rapid escalation in thunderstorms and/or torrential downpours so people need to be aware that conditions could change quickly,'' he said.
"The good news is that this low is delivering a bit more rain than we thought it would - many farmers are telling us this rain couldn't have turned up a better time.''