"That whole proposal was not true, did not happen. I can say that with authority because, as far as the BBC is concerned, I'm the voice of Doctor Who.
"So if I say it, it's true. The BBC own Doctor Who and, for the moment, I run it for them. So I can assure you definitively that was all nonsense."
The TV boss - who has also won acclaim for his Sherlock adaptations - said Yates had never been signed up to work on anything, although he had expressed an interest.
Moffat said there would "hopefully" be a film at some future date, and it would star whoever was playing the Doctor at the time.
"It will be absolutely run by the Doctor Who production office in Cardiff. It will feature the same Doctor as on television."
- PAA